rs8246097 SNP Detail

Summary

• ID
  rs8246097
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142210346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                 A CCCCACCCAC CATGGAGCAT GTGCATCCAA
  AGGGACCATT CCCAACCTAC CCGCCCCCCA GCTGGCCACC CCTCCCTAAG CAGCAGAGCC
  AGCCCCACCC ATCCACCCCA CCTCCCAGGC CATGGTGAGC AGGGCCCATG TCAGAATCCA
  ATGGTTAGCG CAATGGGATA GCCAGCACTC CTGTGAGCCT TGCTCTCCAG GGTCACCCAG
  TCCTCCAAGT ATAGACTTTC CTGGGCACCT CAGAGCTTGC CATCCATGGT CAGGGACCCT
  AGAGGGTCCC TTTATGGCCC ATAGAATCAT CTTTCTGATA AGAGCTAAAT TTACCCAGGG
  Y
  AGCAGTTTGG GTCCTTGGGA GGCTAAACAC CCCATTTTGG AGGGACACAC CCCCTCCACA
  GGCTATGTGG CTACAGGCGG GGA                                        
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741263	U71085_JC2160_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8246097					SNP	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142210346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19967	CpG island 19967	1661 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Mir483	microRNA 483	1613 bp upstream
Tssr70241	transcription start site region 70241	1923 bp upstream
Tssr70242	transcription start site region 70242	1987 bp upstream
Tssr75881	transcription start site region 75881	897 bp upstream
Tssr75882	transcription start site region 75882	787 bp upstream
Tssr75883	transcription start site region 75883	551 bp upstream
Tssr75884	transcription start site region 75884	511 bp upstream
Tssr75885	transcription start site region 75885	442 bp upstream
Tssr75886	transcription start site region 75886	419 bp upstream
Tssr75887	transcription start site region 75887	863 bp downstream