rs8246104 SNP Detail

Summary

• ID
  rs8246104
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142209365 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTATG TAACTCCAGA GAGGTGGGGG
  B
  GGGGGAAGCA AGCCTCCCTG GATGG                                      
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741270	U71085_JC2162_1	ROCHEBIO	RPAMM	f	SNP	C	T	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8246104					SNP	C	T	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142209365 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi19966	CpG island 19966	1178 bp distal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Mir483	microRNA 483	632 bp upstream
Rr167001	regulatory region 167001	within coordinates
Tssr2463	transcription start site region 2463	1775 bp upstream
Tssr70233	transcription start site region 70233	1967 bp downstream
Tssr70234	transcription start site region 70234	1929 bp downstream
Tssr70235	transcription start site region 70235	1906 bp downstream
Tssr70236	transcription start site region 70236	1884 bp downstream
Tssr70237	transcription start site region 70237	1783 bp downstream
Tssr70238	transcription start site region 70238	1753 bp downstream
Tssr70239	transcription start site region 70239	1623 bp downstream
Tssr70240	transcription start site region 70240	1275 bp downstream
Tssr75872	transcription start site region 75872	1941 bp upstream
Tssr75873	transcription start site region 75873	1929 bp upstream
Tssr75874	transcription start site region 75874	1719 bp upstream
Tssr75875	transcription start site region 75875	1682 bp upstream
Tssr75876	transcription start site region 75876	1634 bp upstream
Tssr75877	transcription start site region 75877	1575 bp upstream
Tssr75878	transcription start site region 75878	1293 bp upstream
Tssr75879	transcription start site region 75879	1252 bp upstream
Tssr75880	transcription start site region 75880	1221 bp upstream
Tssr75881	transcription start site region 75881	56 bp downstream
Tssr75882	transcription start site region 75882	97 bp downstream
Tssr75883	transcription start site region 75883	408 bp downstream
Tssr75884	transcription start site region 75884	446 bp downstream
Tssr75885	transcription start site region 75885	493 bp downstream
Tssr75886	transcription start site region 75886	551 bp downstream
Tssr75887	transcription start site region 75887	1844 bp downstream