rs8246108 SNP Detail

Summary

• ID
  rs8246108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142209286 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                  CTACT TCAGTATGTA ACTCCAGAGA GGTGGGGGNG GGGGAAGNAA
  GCCTCCCTGG ATGGGNTGAC ANTTAGTACA CTGGTCTGGC CTTGCTCTTA AGCTACCCCT
  Y
  CCCCCCGGGC AAGGTCNTAA TCTCANAGTC ACAAGTCTGA TAGTTTTAAA AGTTTTTAAA
  GTTNATAAAA GCANAACCAA ATGTGGATGT CAAGTCTCAG CCAGGTTGAG AGTGCACGTG
  TAGTTTGGGG GTACAAGGGG AGAGCTGGAC CTTGGCCATC CAACTTGAGG GGTNCCCNGG
  ANTACNAN                                                         
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	CAST/EiJ	NZB/BlNJ	SPRET/EiJ
ss12741274	U71085_JC2162_5	ROCHEBIO	RPAMM	f	SNP	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	CAST/EiJ	NZB/BlNJ	SPRET/EiJ
rs8246108					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142209286 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi19966	CpG island 19966	1099 bp distal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Mir483	microRNA 483	553 bp upstream
Rr167001	regulatory region 167001	within coordinates
Tssr2463	transcription start site region 2463	1696 bp upstream
Tssr70231	transcription start site region 70231	1984 bp downstream
Tssr70232	transcription start site region 70232	1931 bp downstream
Tssr70233	transcription start site region 70233	1888 bp downstream
Tssr70234	transcription start site region 70234	1850 bp downstream
Tssr70235	transcription start site region 70235	1827 bp downstream
Tssr70236	transcription start site region 70236	1805 bp downstream
Tssr70237	transcription start site region 70237	1704 bp downstream
Tssr70238	transcription start site region 70238	1674 bp downstream
Tssr70239	transcription start site region 70239	1544 bp downstream
Tssr70240	transcription start site region 70240	1196 bp downstream
Tssr75872	transcription start site region 75872	1862 bp upstream
Tssr75873	transcription start site region 75873	1850 bp upstream
Tssr75874	transcription start site region 75874	1640 bp upstream
Tssr75875	transcription start site region 75875	1603 bp upstream
Tssr75876	transcription start site region 75876	1555 bp upstream
Tssr75877	transcription start site region 75877	1496 bp upstream
Tssr75878	transcription start site region 75878	1214 bp upstream
Tssr75879	transcription start site region 75879	1173 bp upstream
Tssr75880	transcription start site region 75880	1142 bp upstream
Tssr75881	transcription start site region 75881	135 bp downstream
Tssr75882	transcription start site region 75882	176 bp downstream
Tssr75883	transcription start site region 75883	487 bp downstream
Tssr75884	transcription start site region 75884	525 bp downstream
Tssr75885	transcription start site region 75885	572 bp downstream
Tssr75886	transcription start site region 75886	630 bp downstream
Tssr75887	transcription start site region 75887	1923 bp downstream