rs8246112 SNP Detail

Summary

• ID
  rs8246112
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142209212 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TCGGACCGCG GCTTCTACTT
  CAGTATGTAA CTCCAGAGAG GTGGGGGCGG GGGAAGCAAG CCTCCCTGGA TGGGGTGACA
  ATTAGTACAC TGGTCTGGCC TTGCTCTTAA GCTACCCCTT CCCCCCCCCC CCCGGGCAAG
  GTCGTAATCT CAAAGTCACA AGTCTGATAG TTTTAAAAGT TTTTAAAGTT GATAAAAGCA
  W
  AACCAAATGT GGATGTCAAG TCTCAGCCAG GTTGAGAGTG CACGTGTAGT TTGGGGGTAC
  AAGGGGAGAG CTGGACCTTG GCCATCCAAC TTGAGGGGTT CCCAGGACTA CAACATGGGG
  TGCTTGCCTG CTTTCAATGT TCATGCTTCT CTTGATTTCC CAGTTGGGGA AGGGGCTGGG
  CATGGGCTCA CTGCTCACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741278	U71085_JC2162_9	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8246112					SNP	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142209212 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi19966	CpG island 19966	1025 bp distal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Mir483	microRNA 483	479 bp upstream
Rr167001	regulatory region 167001	within coordinates
Tssr2463	transcription start site region 2463	1622 bp upstream
Tssr70231	transcription start site region 70231	1910 bp downstream
Tssr70232	transcription start site region 70232	1857 bp downstream
Tssr70233	transcription start site region 70233	1814 bp downstream
Tssr70234	transcription start site region 70234	1776 bp downstream
Tssr70235	transcription start site region 70235	1753 bp downstream
Tssr70236	transcription start site region 70236	1731 bp downstream
Tssr70237	transcription start site region 70237	1630 bp downstream
Tssr70238	transcription start site region 70238	1600 bp downstream
Tssr70239	transcription start site region 70239	1470 bp downstream
Tssr70240	transcription start site region 70240	1122 bp downstream
Tssr75872	transcription start site region 75872	1788 bp upstream
Tssr75873	transcription start site region 75873	1776 bp upstream
Tssr75874	transcription start site region 75874	1566 bp upstream
Tssr75875	transcription start site region 75875	1529 bp upstream
Tssr75876	transcription start site region 75876	1481 bp upstream
Tssr75877	transcription start site region 75877	1422 bp upstream
Tssr75878	transcription start site region 75878	1140 bp upstream
Tssr75879	transcription start site region 75879	1099 bp upstream
Tssr75880	transcription start site region 75880	1068 bp upstream
Tssr75881	transcription start site region 75881	209 bp downstream
Tssr75882	transcription start site region 75882	250 bp downstream
Tssr75883	transcription start site region 75883	561 bp downstream
Tssr75884	transcription start site region 75884	599 bp downstream
Tssr75885	transcription start site region 75885	646 bp downstream
Tssr75886	transcription start site region 75886	704 bp downstream
Tssr75887	transcription start site region 75887	1997 bp downstream