rs8246115 SNP Detail

Summary

• ID
  rs8246115
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142207646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTGGAGC AGAGAGATCT
  TAGTGTGGGA CGTGATGGAA CTGTCCCTGC TCAAGAGGAG GTCACAGATT GATGGTACTA
  CATTGCAGAA TTACCACATA ATTTGATTCA CTGATGGTTG CTGGACATCT CCGAAGAGGC
  TCCCCCGTGG GCGGGGTCTT TGGGTGGTAA CACGATCAGG GGACGATGAC GTTTGGCCTC
  W
  CTGAACTCTT TGAGCTCTTT GGCAAGCATG CGACCCCGGC GGGCACGCAG GAGGGCAGGC
  AGGCCTCTGC GCAGGCGTCC CGCGGACTGT CTCCAGGTGT CATATTGGAA GAACTTGCCC
  ACGGGGTATC TGGGGAAGTC GTCCTGGAGA GGAGGTGCTA GTCAGCAGGT TTCAGGGTAT
  CATGTTAGCC TGAGCTCCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741281	U71085_JC2164_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8246115					SNP	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142207646 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19966	CpG island 19966	376 bp proximal
D7Mit46	DNA segment, Chr 7, Massachusetts Institute of Technology 46	814 bp distal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Mir483	microRNA 483	1015 bp downstream
Rr167001	regulatory region 167001	within coordinates
Tssr2462	transcription start site region 2462	852 bp downstream
Tssr2463	transcription start site region 2463	56 bp upstream
Tssr70229	transcription start site region 70229	892 bp downstream
Tssr70230	transcription start site region 70230	799 bp downstream
Tssr70231	transcription start site region 70231	344 bp downstream
Tssr70232	transcription start site region 70232	291 bp downstream
Tssr70233	transcription start site region 70233	248 bp downstream
Tssr70234	transcription start site region 70234	210 bp downstream
Tssr70235	transcription start site region 70235	187 bp downstream
Tssr70236	transcription start site region 70236	165 bp downstream
Tssr70237	transcription start site region 70237	64 bp downstream
Tssr70238	transcription start site region 70238	34 bp downstream
Tssr70239	transcription start site region 70239	83 bp upstream
Tssr70240	transcription start site region 70240	404 bp upstream
Tssr75854	transcription start site region 75854	1867 bp upstream
Tssr75855	transcription start site region 75855	1683 bp upstream
Tssr75856	transcription start site region 75856	1644 bp upstream
Tssr75857	transcription start site region 75857	1629 bp upstream
Tssr75858	transcription start site region 75858	1591 bp upstream
Tssr75859	transcription start site region 75859	1535 bp upstream
Tssr75860	transcription start site region 75860	1480 bp upstream
Tssr75861	transcription start site region 75861	1448 bp upstream
Tssr75862	transcription start site region 75862	901 bp upstream
Tssr75863	transcription start site region 75863	870 bp upstream
Tssr75864	transcription start site region 75864	841 bp upstream
Tssr75865	transcription start site region 75865	808 bp upstream
Tssr75866	transcription start site region 75866	761 bp upstream
Tssr75867	transcription start site region 75867	728 bp upstream
Tssr75868	transcription start site region 75868	709 bp upstream
Tssr75869	transcription start site region 75869	687 bp upstream
Tssr75870	transcription start site region 75870	674 bp upstream
Tssr75871	transcription start site region 75871	630 bp upstream
Tssr75872	transcription start site region 75872	222 bp upstream
Tssr75873	transcription start site region 75873	210 bp upstream
Tssr75874	transcription start site region 75874	within coordinates
Tssr75875	transcription start site region 75875	25 bp downstream
Tssr75876	transcription start site region 75876	57 bp downstream
Tssr75877	transcription start site region 75877	133 bp downstream
Tssr75878	transcription start site region 75878	409 bp downstream
Tssr75879	transcription start site region 75879	431 bp downstream
Tssr75880	transcription start site region 75880	481 bp downstream
Tssr75881	transcription start site region 75881	1775 bp downstream
Tssr75882	transcription start site region 75882	1816 bp downstream