rs8246116 SNP Detail

Summary

• ID
  rs8246116
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142207653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGAGAGA TCTTAGTGTG
  GGACGTGATG GAACTGTCCC TGCTCAAGAG GAGGTCACAG ATTGATGGTA CTACATTGCA
  GAATTACCAC ATAATTTGAT TCACTGATGG TTGCTGGACA TCTCCGAAGA GGCTCCCCCG
  TGGGCGGGGT CTTTGGGTGG TAACACGATC AGGGGACGAT GACGTTTGGC CTCTCTGAAC
  K
  CTTTGAGCTC TTTGGCAAGC ATGCGACCCC GGCGGGCACG CAGGAGGGCA GGCAGGCCTC
  TGCGCAGGCG TCCCGCGGAC TGTCTCCAGG TGTCATATTG GAAGAACTTG CCCACGGGGT
  ATCTGGGGAA GTCGTCCTGG AGAGGAGGTG CTAGTCAGCA GGTTTCAGGG TATCATGTTA
  GCCTGAGCTC CCATCTAGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741282	U71085_JC2164_2	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8246116					SNP	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142207653 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19966	CpG island 19966	369 bp proximal
D7Mit46	DNA segment, Chr 7, Massachusetts Institute of Technology 46	821 bp distal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Mir483	microRNA 483	1008 bp downstream
Rr167001	regulatory region 167001	within coordinates
Tssr2462	transcription start site region 2462	859 bp downstream
Tssr2463	transcription start site region 2463	63 bp upstream
Tssr70229	transcription start site region 70229	899 bp downstream
Tssr70230	transcription start site region 70230	806 bp downstream
Tssr70231	transcription start site region 70231	351 bp downstream
Tssr70232	transcription start site region 70232	298 bp downstream
Tssr70233	transcription start site region 70233	255 bp downstream
Tssr70234	transcription start site region 70234	217 bp downstream
Tssr70235	transcription start site region 70235	194 bp downstream
Tssr70236	transcription start site region 70236	172 bp downstream
Tssr70237	transcription start site region 70237	71 bp downstream
Tssr70238	transcription start site region 70238	41 bp downstream
Tssr70239	transcription start site region 70239	76 bp upstream
Tssr70240	transcription start site region 70240	397 bp upstream
Tssr75854	transcription start site region 75854	1874 bp upstream
Tssr75855	transcription start site region 75855	1690 bp upstream
Tssr75856	transcription start site region 75856	1651 bp upstream
Tssr75857	transcription start site region 75857	1636 bp upstream
Tssr75858	transcription start site region 75858	1598 bp upstream
Tssr75859	transcription start site region 75859	1542 bp upstream
Tssr75860	transcription start site region 75860	1487 bp upstream
Tssr75861	transcription start site region 75861	1455 bp upstream
Tssr75862	transcription start site region 75862	908 bp upstream
Tssr75863	transcription start site region 75863	877 bp upstream
Tssr75864	transcription start site region 75864	848 bp upstream
Tssr75865	transcription start site region 75865	815 bp upstream
Tssr75866	transcription start site region 75866	768 bp upstream
Tssr75867	transcription start site region 75867	735 bp upstream
Tssr75868	transcription start site region 75868	716 bp upstream
Tssr75869	transcription start site region 75869	694 bp upstream
Tssr75870	transcription start site region 75870	681 bp upstream
Tssr75871	transcription start site region 75871	637 bp upstream
Tssr75872	transcription start site region 75872	229 bp upstream
Tssr75873	transcription start site region 75873	217 bp upstream
Tssr75874	transcription start site region 75874	7 bp upstream
Tssr75875	transcription start site region 75875	18 bp downstream
Tssr75876	transcription start site region 75876	50 bp downstream
Tssr75877	transcription start site region 75877	126 bp downstream
Tssr75878	transcription start site region 75878	402 bp downstream
Tssr75879	transcription start site region 75879	424 bp downstream
Tssr75880	transcription start site region 75880	474 bp downstream
Tssr75881	transcription start site region 75881	1768 bp downstream
Tssr75882	transcription start site region 75882	1809 bp downstream