rs8246117 SNP Detail

Summary

• ID
  rs8246117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142207351 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACCAT CGGGCAAGGG GATCTCAGCA
  R
  TTCTAAAAAA CCAAATTTGA TTGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	CAST/EiJ	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12741283	U71085_JC2165_1	ROCHEBIO	RPAMM	f	SNP	G	A	G	A		A	G	G		A
ss322471547	CHEV_7_149839519	CHEVERUD	SCREENING_POP	r	SNP					T				C
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	CAST/EiJ	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8246117					SNP	G	A	G	A	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142207351 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi19966	CpG island 19966	671 bp proximal
D7Mit46	DNA segment, Chr 7, Massachusetts Institute of Technology 46	519 bp distal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Mir483	microRNA 483	1310 bp downstream
Rr167001	regulatory region 167001	49 bp proximal
Tssr2462	transcription start site region 2462	557 bp downstream
Tssr2463	transcription start site region 2463	230 bp downstream
Tssr70229	transcription start site region 70229	597 bp downstream
Tssr70230	transcription start site region 70230	504 bp downstream
Tssr70231	transcription start site region 70231	49 bp downstream
Tssr70232	transcription start site region 70232	within coordinates
Tssr70233	transcription start site region 70233	25 bp upstream
Tssr70234	transcription start site region 70234	51 bp upstream
Tssr70235	transcription start site region 70235	87 bp upstream
Tssr70236	transcription start site region 70236	119 bp upstream
Tssr70237	transcription start site region 70237	215 bp upstream
Tssr70238	transcription start site region 70238	234 bp upstream
Tssr70239	transcription start site region 70239	378 bp upstream
Tssr70240	transcription start site region 70240	699 bp upstream
Tssr75853	transcription start site region 75853	1979 bp upstream
Tssr75854	transcription start site region 75854	1572 bp upstream
Tssr75855	transcription start site region 75855	1388 bp upstream
Tssr75856	transcription start site region 75856	1349 bp upstream
Tssr75857	transcription start site region 75857	1334 bp upstream
Tssr75858	transcription start site region 75858	1296 bp upstream
Tssr75859	transcription start site region 75859	1240 bp upstream
Tssr75860	transcription start site region 75860	1185 bp upstream
Tssr75861	transcription start site region 75861	1153 bp upstream
Tssr75862	transcription start site region 75862	606 bp upstream
Tssr75863	transcription start site region 75863	575 bp upstream
Tssr75864	transcription start site region 75864	546 bp upstream
Tssr75865	transcription start site region 75865	513 bp upstream
Tssr75866	transcription start site region 75866	466 bp upstream
Tssr75867	transcription start site region 75867	433 bp upstream
Tssr75868	transcription start site region 75868	414 bp upstream
Tssr75869	transcription start site region 75869	392 bp upstream
Tssr75870	transcription start site region 75870	379 bp upstream
Tssr75871	transcription start site region 75871	335 bp upstream
Tssr75872	transcription start site region 75872	52 bp downstream
Tssr75873	transcription start site region 75873	74 bp downstream
Tssr75874	transcription start site region 75874	283 bp downstream
Tssr75875	transcription start site region 75875	320 bp downstream
Tssr75876	transcription start site region 75876	352 bp downstream
Tssr75877	transcription start site region 75877	428 bp downstream
Tssr75878	transcription start site region 75878	704 bp downstream
Tssr75879	transcription start site region 75879	726 bp downstream
Tssr75880	transcription start site region 75880	776 bp downstream