rs8246119 SNP Detail

Summary

• ID
  rs8246119
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142206596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGTTGGG GAGCACCGGG
  CTCACCATGT GGACAGGTGC TTAGATGGAA TTGAGCCTTG CTAGAACACC TCCCTCACTG
  AGAAAGACAG AACTAGCAGC CTGGTCACAC ATAGAGCCAA TAAGCAGCAG CAGAAACTAG
  ATGGATTGGG AGGAGAGCTC AAACCATGCA AACTGCTCAG GAAATTTGGG ATGGGCCTTG
  K
  TTTGGGGAAT GTGGTTCAAA TCGAAGTTGT TCAGCCATTT CAATGTTTTC ATCCAATTAT
  GTGGGTGTGC ATACCTCTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGCATATGT
  GTTATGTGTA TGTGTGTGTT AATGCCTGTG GGTGTGAGTA TAATCATGTG CTTTTTAGGG
  TAGGTAGGGA AAAGTGAGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741285	U71085_JC2166_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8246119					SNP	T	T	T	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142206596 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19966	CpG island 19966	1426 bp proximal
D7Mit46	DNA segment, Chr 7, Massachusetts Institute of Technology 46	54 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Rr167001	regulatory region 167001	804 bp proximal
Tssr2462	transcription start site region 2462	187 bp upstream
Tssr2463	transcription start site region 2463	985 bp downstream
Tssr70229	transcription start site region 70229	85 bp upstream
Tssr70230	transcription start site region 70230	217 bp upstream
Tssr70231	transcription start site region 70231	694 bp upstream
Tssr70232	transcription start site region 70232	730 bp upstream
Tssr70233	transcription start site region 70233	780 bp upstream
Tssr70234	transcription start site region 70234	806 bp upstream
Tssr70235	transcription start site region 70235	842 bp upstream
Tssr70236	transcription start site region 70236	874 bp upstream
Tssr70237	transcription start site region 70237	970 bp upstream
Tssr70238	transcription start site region 70238	989 bp upstream
Tssr70239	transcription start site region 70239	1133 bp upstream
Tssr70240	transcription start site region 70240	1454 bp upstream
Tssr75847	transcription start site region 75847	1768 bp upstream
Tssr75848	transcription start site region 75848	1734 bp upstream
Tssr75849	transcription start site region 75849	1514 bp upstream
Tssr75850	transcription start site region 75850	1468 bp upstream
Tssr75851	transcription start site region 75851	1455 bp upstream
Tssr75852	transcription start site region 75852	1265 bp upstream
Tssr75853	transcription start site region 75853	1224 bp upstream
Tssr75854	transcription start site region 75854	817 bp upstream
Tssr75855	transcription start site region 75855	633 bp upstream
Tssr75856	transcription start site region 75856	594 bp upstream
Tssr75857	transcription start site region 75857	579 bp upstream
Tssr75858	transcription start site region 75858	541 bp upstream
Tssr75859	transcription start site region 75859	485 bp upstream
Tssr75860	transcription start site region 75860	430 bp upstream
Tssr75861	transcription start site region 75861	398 bp upstream
Tssr75862	transcription start site region 75862	133 bp downstream
Tssr75863	transcription start site region 75863	152 bp downstream
Tssr75864	transcription start site region 75864	190 bp downstream
Tssr75865	transcription start site region 75865	213 bp downstream
Tssr75866	transcription start site region 75866	268 bp downstream
Tssr75867	transcription start site region 75867	311 bp downstream
Tssr75868	transcription start site region 75868	334 bp downstream
Tssr75869	transcription start site region 75869	344 bp downstream
Tssr75870	transcription start site region 75870	365 bp downstream
Tssr75871	transcription start site region 75871	406 bp downstream
Tssr75872	transcription start site region 75872	807 bp downstream
Tssr75873	transcription start site region 75873	829 bp downstream
Tssr75874	transcription start site region 75874	1038 bp downstream
Tssr75875	transcription start site region 75875	1075 bp downstream
Tssr75876	transcription start site region 75876	1107 bp downstream
Tssr75877	transcription start site region 75877	1183 bp downstream
Tssr75878	transcription start site region 75878	1459 bp downstream
Tssr75879	transcription start site region 75879	1481 bp downstream
Tssr75880	transcription start site region 75880	1531 bp downstream