rs8246123 SNP Detail

Summary

• ID
  rs8246123
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142206750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTCAAAC CATGCAAACT
  GCTCAGGAAA TTTGGGATGG GCCTTGTTTT GGGGAATGTG GTTCAAATCG AAGTTGTTCA
  GCCATTTCAA TGTTTTCATC CAATTATGTG GGTGTGCATA CCTCTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG CATATGTGTT ATGTGTATGT GTGTGTTAAT GCCTGTGGGT
  R
  TGAGTATAAT CATGTGCTTT TTAGGGTAGG TAGGGAAAAG TGAGATTTTG GGACTGGGGG
  CTTGTGCCAA TTAAGTTCTA TTTCCAGTTT TCATGTTCTG TTCTTCTCCT TGGGTTCTTT
  CACCCAGCCC CCTTGGTGAC ATGGGGGACA TTTGTGATGG AATGACCAGT GAAGAAAGAG
  TTTGGGCGGC TATTGTTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741289	U71085_JC2166_5	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8246123					SNP	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142206750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19966	CpG island 19966	1272 bp proximal
D7Mit46	DNA segment, Chr 7, Massachusetts Institute of Technology 46	within coordinates
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Mir483	microRNA 483	1911 bp downstream
Rr167001	regulatory region 167001	650 bp proximal
Tssr2462	transcription start site region 2462	33 bp upstream
Tssr2463	transcription start site region 2463	831 bp downstream
Tssr70229	transcription start site region 70229	within coordinates
Tssr70230	transcription start site region 70230	63 bp upstream
Tssr70231	transcription start site region 70231	540 bp upstream
Tssr70232	transcription start site region 70232	576 bp upstream
Tssr70233	transcription start site region 70233	626 bp upstream
Tssr70234	transcription start site region 70234	652 bp upstream
Tssr70235	transcription start site region 70235	688 bp upstream
Tssr70236	transcription start site region 70236	720 bp upstream
Tssr70237	transcription start site region 70237	816 bp upstream
Tssr70238	transcription start site region 70238	835 bp upstream
Tssr70239	transcription start site region 70239	979 bp upstream
Tssr70240	transcription start site region 70240	1300 bp upstream
Tssr75847	transcription start site region 75847	1922 bp upstream
Tssr75848	transcription start site region 75848	1888 bp upstream
Tssr75849	transcription start site region 75849	1668 bp upstream
Tssr75850	transcription start site region 75850	1622 bp upstream
Tssr75851	transcription start site region 75851	1609 bp upstream
Tssr75852	transcription start site region 75852	1419 bp upstream
Tssr75853	transcription start site region 75853	1378 bp upstream
Tssr75854	transcription start site region 75854	971 bp upstream
Tssr75855	transcription start site region 75855	787 bp upstream
Tssr75856	transcription start site region 75856	748 bp upstream
Tssr75857	transcription start site region 75857	733 bp upstream
Tssr75858	transcription start site region 75858	695 bp upstream
Tssr75859	transcription start site region 75859	639 bp upstream
Tssr75860	transcription start site region 75860	584 bp upstream
Tssr75861	transcription start site region 75861	552 bp upstream
Tssr75862	transcription start site region 75862	5 bp upstream
Tssr75863	transcription start site region 75863	within coordinates
Tssr75864	transcription start site region 75864	36 bp downstream
Tssr75865	transcription start site region 75865	59 bp downstream
Tssr75866	transcription start site region 75866	114 bp downstream
Tssr75867	transcription start site region 75867	157 bp downstream
Tssr75868	transcription start site region 75868	180 bp downstream
Tssr75869	transcription start site region 75869	190 bp downstream
Tssr75870	transcription start site region 75870	211 bp downstream
Tssr75871	transcription start site region 75871	252 bp downstream
Tssr75872	transcription start site region 75872	653 bp downstream
Tssr75873	transcription start site region 75873	675 bp downstream
Tssr75874	transcription start site region 75874	884 bp downstream
Tssr75875	transcription start site region 75875	921 bp downstream
Tssr75876	transcription start site region 75876	953 bp downstream
Tssr75877	transcription start site region 75877	1029 bp downstream
Tssr75878	transcription start site region 75878	1305 bp downstream
Tssr75879	transcription start site region 75879	1327 bp downstream
Tssr75880	transcription start site region 75880	1377 bp downstream