rs8246159 SNP Detail

Summary

• ID
  rs8246159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142216372 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTTTC ATCCCCCGTG TTGGCTCATG
  Y
  CTGGTGTCCT CAAACATTAG GCAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12741325	U71085_JC2182_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8246159					SNP	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142216372 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi19968	CpG island 19968	1200 bp distal
Cpgi19969	CpG island 19969	1212 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr316	regulatory region 316	1609 bp proximal
Rr658254	regulatory region 658254	1341 bp distal
Rr658255	regulatory region 658255	986 bp distal
Rr658256	regulatory region 658256	278 bp proximal
Tssr2464	transcription start site region 2464	1714 bp upstream
Tssr2465	transcription start site region 2465	1551 bp upstream
Tssr2466	transcription start site region 2466	1531 bp upstream
Tssr70253	transcription start site region 70253	1987 bp downstream
Tssr70254	transcription start site region 70254	1968 bp downstream
Tssr70255	transcription start site region 70255	1875 bp downstream
Tssr75890	transcription start site region 75890	1770 bp upstream
Tssr75891	transcription start site region 75891	1647 bp upstream
Tssr75892	transcription start site region 75892	1595 bp upstream
Tssr75893	transcription start site region 75893	1577 bp upstream
Tssr75894	transcription start site region 75894	1429 bp upstream
Tssr75895	transcription start site region 75895	1397 bp upstream
Tssr75896	transcription start site region 75896	1366 bp upstream
Tssr75897	transcription start site region 75897	1348 bp upstream
Tssr75898	transcription start site region 75898	1321 bp upstream
Tssr75899	transcription start site region 75899	778 bp upstream
Tssr75900	transcription start site region 75900	755 bp upstream