rs8246162 SNP Detail

Summary

• ID
  rs8246162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:142215027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCGGGGAC AATGCCCAAA
  TTTGGGGGAA ACTGGGGGCA ATGCCCAGTC GTTTTCCTGG ACACGGGAGC AACACTGCCC
  ACGTCCTGGC CGCCGCGCAG TGTCCAGTGC GTGTTTGGGG CACACACACT TTTCCAAAAT
  CTGTGCTGCC GCTGGGACAC CGTAGGAGAA GTGACGAGGC CGATACCACT GTTATGCGCA
  R
  GACGGGAAGC TGCCGAAAGT GGCCAGCGGA AACAATGATC AAATTTCGGG GATCCCAAGT
  CAGACCCTTG TCTGATTTGC GGTCCTGGGA ATGAGCGGCC CAAAGTAGGG GGACTCGAAG
  GCGACTCCAT AAATGGGAAA ACTGTGGCGA ATGACTAAAT TTGAGATTCC AGAAAAATTA
  GAATCCAAGT TGGGGAATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12741328	U71085_JC2183_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8246162					SNP	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142215027 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19967	CpG island 19967			1073 bp distal
Cpgi19968	CpG island 19968			within coordinates
Gm49394	predicted gene, 49394			Intron
Igf2	insulin-like growth factor 2			Intron
				mRNA-UTR
Igf2os	insulin-like growth factor 2, opposite strand			within coordinates
Rr658250	regulatory region 658250			1812 bp distal
Rr658251	regulatory region 658251			1938 bp distal
Rr658252	regulatory region 658252			1587 bp distal
Rr658253	regulatory region 658253			1748 bp distal
Rr658254	regulatory region 658254			within coordinates
Rr658255	regulatory region 658255			5 bp proximal
Rr658256	regulatory region 658256			1623 bp proximal
Tssr2464	transcription start site region 2464			369 bp upstream
Tssr2465	transcription start site region 2465			206 bp upstream
Tssr2466	transcription start site region 2466			186 bp upstream
Tssr70249	transcription start site region 70249			947 bp downstream
Tssr70250	transcription start site region 70250			831 bp downstream
Tssr70251	transcription start site region 70251			793 bp downstream
Tssr70252	transcription start site region 70252			706 bp downstream
Tssr70253	transcription start site region 70253			642 bp downstream
Tssr70254	transcription start site region 70254			623 bp downstream
Tssr70255	transcription start site region 70255			530 bp downstream
Tssr75889	transcription start site region 75889			1793 bp upstream
Tssr75890	transcription start site region 75890			425 bp upstream
Tssr75891	transcription start site region 75891			302 bp upstream
Tssr75892	transcription start site region 75892			250 bp upstream
Tssr75893	transcription start site region 75893			232 bp upstream
Tssr75894	transcription start site region 75894			84 bp upstream
Tssr75895	transcription start site region 75895			52 bp upstream
Tssr75896	transcription start site region 75896			21 bp upstream
Tssr75897	transcription start site region 75897			3 bp upstream
Tssr75898	transcription start site region 75898			15 bp downstream
Tssr75899	transcription start site region 75899			553 bp downstream
Tssr75900	transcription start site region 75900			568 bp downstream