rs8246179 SNP Detail

Summary

• ID
  rs8246179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142217638 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTGTC CTTCCCGGCC CGGGAGCTCA
  Y
  TTTCTCAAAT TCAGCTCTAG TTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741345	U71085_JC2192_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8246179					SNP	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142217638 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi19969	CpG island 19969	within coordinates
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr15	regulatory region 15	1635 bp proximal
Rr316	regulatory region 316	343 bp proximal
Rr658256	regulatory region 658256	within coordinates
Tssr70256	transcription start site region 70256	1228 bp upstream
Tssr70257	transcription start site region 70257	1884 bp upstream
Tssr70258	transcription start site region 70258	1902 bp upstream
Tssr75901	transcription start site region 75901	762 bp downstream
Tssr75902	transcription start site region 75902	793 bp downstream
Tssr75903	transcription start site region 75903	884 bp downstream