rs8246180 SNP Detail

Summary

• ID
  rs8246180
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142217561 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CCAATCTGCG TCGCCTGTGC
  CCCTTTCCCG CGTCTGGGTT CCCCCGTGAG GGCGCCCCTG CTCCGTGTGA GTTCCTTGGC
  ACCGCGGATC CTGGCGCCCT GTCCTTCCCG GCCCGGGAGC TCACTTTCTC AAATTCAGCT
  CTAGTTCTCT GTGGTCCCCC TACAACCCGA GGAACTTACC GGCTTCTCTG AACCTCAGGA
  S
  TTAGTTTGAC TGAGATCCTT GAAATTTAAG CATTGCTTTG GGGGGTGGGG GTGGGGGCTC
  CAAAATCGGT CAGCATTTGT TCTGTTCACA GGGAAAAGGT TTTGTTGTTG TTGTTGTTTG
  GTTTTTATTT TGTTTTGTTT TGTTTTGTTT TTGATACTTG CTTTCCAAAT ATTTTAAAGG
  GTGGGAATTC TGCCTCTGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12741346	U71085_JC2192_2	ROCHEBIO	RPAMM	f	SNP	C	G	G		G	C	C		G
ss322471559	CHEV_7_149849729	CHEVERUD	SCREENING_POP	r	SNP				C				G
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8246180					SNP	C	G	G	G	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142217561 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi19969	CpG island 19969	23 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr15	regulatory region 15	1712 bp proximal
Rr316	regulatory region 316	420 bp proximal
Rr658256	regulatory region 658256	within coordinates
Tssr70256	transcription start site region 70256	1305 bp upstream
Tssr70257	transcription start site region 70257	1961 bp upstream
Tssr70258	transcription start site region 70258	1979 bp upstream
Tssr75899	transcription start site region 75899	1967 bp upstream
Tssr75900	transcription start site region 75900	1944 bp upstream
Tssr75901	transcription start site region 75901	839 bp downstream
Tssr75902	transcription start site region 75902	870 bp downstream
Tssr75903	transcription start site region 75903	961 bp downstream