rs8246196 SNP Detail

Summary

• ID
  rs8246196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142220018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCACTAA GCCTGGCTGG
  CACCCTCAGC CAGGGCCTCT GCTTGTCTCC CCTCTCTCCC TCCAGGCAGT GGGGCTTCCT
  TATCCCCCCG TGTGACTTTT CCTAGCTTGT TGTAGTCTCC GGGCTAACTG CTCAGGAATA
  AGCCAAGACT TTTACACACC CTACTTCTCT CCGAGGGTCC CCAGCATGCT CTTCCTCATG
  Y
  CTGTGCTGGA TGCCTGCCAC AGAGGACACA CTCAACTGGG CTGCGGTCTT GGACACCACA
  TAGGGACTCC ACACCAGGAA GACCCAAGCA ATGCTCTATG CCAATCTGCA AGCCTGGGAA
  GAAGTCACTA CCTGAACCAC CAACATGAGG ATTGCACCAA ACTGATCAAC ACAACCCACA
  CCAAAAGTAA GTAAGGGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741362	U71085_JC2198_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8246196					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142220018 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19969	CpG island 19969	1502 bp distal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr15	regulatory region 15	550 bp distal
Rr658256	regulatory region 658256	1101 bp distal
Tssr70256	transcription start site region 70256	1124 bp downstream
Tssr70257	transcription start site region 70257	487 bp downstream
Tssr70258	transcription start site region 70258	461 bp downstream
Tssr75901	transcription start site region 75901	1591 bp upstream
Tssr75902	transcription start site region 75902	1568 bp upstream
Tssr75903	transcription start site region 75903	1450 bp upstream
Tssr75904	transcription start site region 75904	60 bp upstream
Tssr75905	transcription start site region 75905	538 bp downstream