rs8246202 SNP Detail

Summary

• ID
  rs8246202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142217138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTTGGGA CTTTGAAGGT
  GCCAGGAAAA TTGTTAAAGC TGTCTGGGTG GGATTCAACT TGTAAAATTT GGAGTTAGGG
  CAATAGACTA CAGAATCTAG TGTTCCACGT TAATAAAACC AGAGGACGGG TGGCGGGGGA
  AGAGAGTCAG CAGGAACATT ACTGCAGATA TAAAATGATA GGAACATGGG GAAAACACCC
  Y
  GCTACCTCAT CCCCTGGAGA CAGTGCCTAA ATGCTGTCAA AATGTCCGCT CTCCCAAGTA
  AGGAAATTTT GTCAAAAGGA CTAAGGACCC AGGCTTACTT TAAATTTTAG GGAACTGAGA
  ATGGTGGTTT TATATCTATA TATAGGAGCT TGCATTTAAA ATGGTTAGGA GCCAGAAGCA
  AACTTGGGGG CCCAAGCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12741368	U71085_JC2199_1	ROCHEBIO	RPAMM	f	SNP	C	T		T	C	C		C
ss322471558	CHEV_7_149849306	CHEVERUD	SCREENING_POP	f	SNP			T				C
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8246202					SNP	C	T	T	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142217138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19968	CpG island 19968	1966 bp distal
Cpgi19969	CpG island 19969	446 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr316	regulatory region 316	843 bp proximal
Rr658255	regulatory region 658255	1752 bp distal
Rr658256	regulatory region 658256	within coordinates
Tssr70256	transcription start site region 70256	1728 bp upstream
Tssr75899	transcription start site region 75899	1544 bp upstream
Tssr75900	transcription start site region 75900	1521 bp upstream
Tssr75901	transcription start site region 75901	1262 bp downstream
Tssr75902	transcription start site region 75902	1293 bp downstream
Tssr75903	transcription start site region 75903	1384 bp downstream