rs8246204 SNP Detail

Summary

• ID
  rs8246204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142215621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAATGGG AGATGAAAAA
  CAACAGATGG ATTTTAGGGA ATTCAGGTCA GTTCTTTTGA GGGGTGGGAG TGGAGACTAG
  GGTTCACCCT GAAGCCAGTG GGCCCTACAA CACCCGGGAA AAATCACCTC TAATTTCTGT
  GGCTTCAGAG AAGTCCTCTA GAGAATGAGG AAATGCTGTC TAAATGTGGT GGAATTAGAA
  R
  TGCAAGAAGT CCATTTGAGA AAGCCAGAAA AAATCAATGT CTTTTAATAT TTTAATTTCC
  TAAACAGATT CCTATTGATC TTTTTGTTGA ACAAGGGGGA GTTTGTATGT TTTCTTGGAC
  AATGTTTGTT CTTGGAGAAA CATACTCCCT GTTTTGTGGA TCAATAAAAA TTACCCAATG
  GATGATGAAA TCTAAATTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12741370	U71085_JC2200_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	G	A	G	A		G	A	A		G
ss322471555	CHEV_7_149847789	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8246204					SNP	A	A	A	G	A	G	A	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142215621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19967	CpG island 19967	1667 bp distal
Cpgi19968	CpG island 19968	449 bp distal
Cpgi19969	CpG island 19969	1963 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr658254	regulatory region 658254	590 bp distal
Rr658255	regulatory region 658255	235 bp distal
Rr658256	regulatory region 658256	1029 bp proximal
Tssr2464	transcription start site region 2464	963 bp upstream
Tssr2465	transcription start site region 2465	800 bp upstream
Tssr2466	transcription start site region 2466	780 bp upstream
Tssr70249	transcription start site region 70249	1541 bp downstream
Tssr70250	transcription start site region 70250	1425 bp downstream
Tssr70251	transcription start site region 70251	1387 bp downstream
Tssr70252	transcription start site region 70252	1300 bp downstream
Tssr70253	transcription start site region 70253	1236 bp downstream
Tssr70254	transcription start site region 70254	1217 bp downstream
Tssr70255	transcription start site region 70255	1124 bp downstream
Tssr75890	transcription start site region 75890	1019 bp upstream
Tssr75891	transcription start site region 75891	896 bp upstream
Tssr75892	transcription start site region 75892	844 bp upstream
Tssr75893	transcription start site region 75893	826 bp upstream
Tssr75894	transcription start site region 75894	678 bp upstream
Tssr75895	transcription start site region 75895	646 bp upstream
Tssr75896	transcription start site region 75896	615 bp upstream
Tssr75897	transcription start site region 75897	597 bp upstream
Tssr75898	transcription start site region 75898	570 bp upstream
Tssr75899	transcription start site region 75899	27 bp upstream
Tssr75900	transcription start site region 75900	4 bp upstream