rs8246205 SNP Detail

Summary

• ID
  rs8246205
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142215628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGATGAA AAACAACAGA
  TGGATTTTAG GGAATTCAGG TCAGTTCTTT TGAGGGGTGG GAGTGGAGAC TAGGGTTCAC
  CCTGAAGCCA GTGGGCCCTA CAACACCCGG GAAAAATCAC CTCTAATTTC TGTGGCTTCA
  GAGAAGTCCT CTAGAGAATG AGGAAATGCT GTCTAAATGT GGTGGAATTA GAAATGCAAG
  M
  AGTCCATTTG AGAAAGCCAG AAAAAATCAA TGTCTTTTAA TATTTTAATT TCCTAAACAG
  ATTCCTATTG ATCTTTTTGT TGAACAAGGG GGAGTTTGTA TGTTTTCTTG GACAATGTTT
  GTTCTTGGAG AAACATACTC CCTGTTTTGT GGATCAATAA AAATTACCCA ATGGATGATG
  AAATCTAAAT TGCAGGGAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12741371	U71085_JC2200_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	C	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8246205					SNP	A	A	A	A	A	C	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142215628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19967	CpG island 19967	1674 bp distal
Cpgi19968	CpG island 19968	456 bp distal
Cpgi19969	CpG island 19969	1956 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Igf2os	insulin-like growth factor 2, opposite strand	within coordinates
Rr658254	regulatory region 658254	597 bp distal
Rr658255	regulatory region 658255	242 bp distal
Rr658256	regulatory region 658256	1022 bp proximal
Tssr2464	transcription start site region 2464	970 bp upstream
Tssr2465	transcription start site region 2465	807 bp upstream
Tssr2466	transcription start site region 2466	787 bp upstream
Tssr70249	transcription start site region 70249	1548 bp downstream
Tssr70250	transcription start site region 70250	1432 bp downstream
Tssr70251	transcription start site region 70251	1394 bp downstream
Tssr70252	transcription start site region 70252	1307 bp downstream
Tssr70253	transcription start site region 70253	1243 bp downstream
Tssr70254	transcription start site region 70254	1224 bp downstream
Tssr70255	transcription start site region 70255	1131 bp downstream
Tssr75890	transcription start site region 75890	1026 bp upstream
Tssr75891	transcription start site region 75891	903 bp upstream
Tssr75892	transcription start site region 75892	851 bp upstream
Tssr75893	transcription start site region 75893	833 bp upstream
Tssr75894	transcription start site region 75894	685 bp upstream
Tssr75895	transcription start site region 75895	653 bp upstream
Tssr75896	transcription start site region 75896	622 bp upstream
Tssr75897	transcription start site region 75897	604 bp upstream
Tssr75898	transcription start site region 75898	577 bp upstream
Tssr75899	transcription start site region 75899	34 bp upstream
Tssr75900	transcription start site region 75900	11 bp upstream