rs8246982 SNP Detail

Summary

• ID
  rs8246982
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7678313 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCGGT GGATGACCGG GGTCCTGGGA
  R
  TGATTATGGG TGGTGAGAGC CGGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12742212	M29054_AN534_2	ROCHEBIO	RPAMM	f	SNP	G			G	A	G	G	G	G		G	G	G	G					A		G	G				G
ss45405463	mCV25135909	ABI	CRAMUS_MOUSE	r	SNP			C		C							C		T
ss49552836	NES12889946	PERLEGEN	MM_PANEL2	r	SNP		C			C	C		C		C	C		C	T	T	T		C		T			C	C			C
ss134559908	ENSMUSSNP5288122	ENSEMBL	ENSEMBL_Sanger	r	SNP			C		C									T
ss320643281	CHEV_3_7613253	CHEVERUD	SCREENING_POP	r	SNP																	T								T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8246982					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	A	A	G	A	A	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49552836	NES12889946	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7678313 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12955	CpG island 12955	within coordinates
Gm16685	predicted gene, 16685	within coordinates
Il7	interleukin 7	within coordinates
Rr77757	regulatory region 77757	within coordinates
Tssr28303	transcription start site region 28303	548 bp downstream
Tssr28304	transcription start site region 28304	618 bp upstream
Tssr32541	transcription start site region 32541	324 bp downstream
Tssr32542	transcription start site region 32542	389 bp downstream
Tssr32543	transcription start site region 32543	441 bp downstream
Tssr32544	transcription start site region 32544	472 bp downstream
Tssr32545	transcription start site region 32545	485 bp downstream
Tssr32546	transcription start site region 32546	518 bp downstream