rs8246984 SNP Detail

Summary

• ID
  rs8246984
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7679831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGC ACTTCCAAAA TAAATCCTAC
  M
  CGGTGCCTGC AGGGCTGTTT AAACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12742214	M29054_AN535_1	ROCHEBIO	RPAMM	f	SNP	C		A	C	C		C		C	C	C	C					A		C	C				C
ss49552830	NES12889823	PERLEGEN	MM_PANEL2	f	SNP		C	C	C		C		C	C		C	A	A	A		C		A			C	C			C
ss320643284	CHEV_3_7614771	CHEVERUD	SCREENING_POP	f	SNP															A								A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8246984					SNP	C	C	?	C	C	C	C	C	C	C	C	?	A	A	A	C	A	A	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49552830	NES12889823	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7679831 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12955	CpG island 12955	1329 bp distal
Gm16685	predicted gene, 16685	within coordinates
Il7	interleukin 7	1011 bp upstream
Rr77757	regulatory region 77757	830 bp distal
Tssr28304	transcription start site region 28304	882 bp downstream
Tssr28305	transcription start site region 28305	1222 bp upstream
Tssr32541	transcription start site region 32541	1179 bp upstream
Tssr32542	transcription start site region 32542	1115 bp upstream
Tssr32543	transcription start site region 32543	1067 bp upstream
Tssr32544	transcription start site region 32544	1039 bp upstream
Tssr32545	transcription start site region 32545	1006 bp upstream
Tssr32546	transcription start site region 32546	986 bp upstream