rs8246987 SNP Detail

Summary

• ID
  rs8246987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7679997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGTCTTA GTGCACTTCC
  AAAATAAATC CTACCCGGTG CCTGCAGGGC TGTTTAAACA CCTCTCTGTT GTCTCTCTTG
  TTGTCATCCT GCTCAAAGCA TCAGGAGATT TGACAGTACT TGTTATCTTC ACTGCAGCCC
  TGGTCTCCAG ACAGCTCCCA TCCACAGAGA AGGGCTATCT AGAATAGGAT TAGGCTCCAG
  Y
  GTTGCAGTAT GACAGGATGG AAGAGAGCTA CTGTGGTGAG AAAGCATTTC AACGATGGAA
  CATGGAAAAA TGTCCACCAA AAAAAAAAAA AAAAAAAAAA AAAAAAGGAA AGAGAGGAAA
  GAGAAAGAAA ACAGGGAATT GCTGGCAAAT GAAATCAGGA AACTGAGCCT CTCAGGCACA
  CATTTCCAAA AATGTCATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12742217	M29054_AN535_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8246987					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7679997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12955	CpG island 12955	1495 bp distal
Gm16685	predicted gene, 16685	within coordinates
Il7	interleukin 7	1177 bp upstream
Rr77757	regulatory region 77757	996 bp distal
Tssr28304	transcription start site region 28304	1048 bp downstream
Tssr28305	transcription start site region 28305	1056 bp upstream
Tssr32541	transcription start site region 32541	1345 bp upstream
Tssr32542	transcription start site region 32542	1281 bp upstream
Tssr32543	transcription start site region 32543	1233 bp upstream
Tssr32544	transcription start site region 32544	1205 bp upstream
Tssr32545	transcription start site region 32545	1172 bp upstream
Tssr32546	transcription start site region 32546	1152 bp upstream