rs8246989 SNP Detail

Summary

• ID
  rs8246989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7679703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAA AAGAGGCAGA GAGGTACTGT
  Y
  TGTGCATTTA GAGTGTGGAC CATAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss12742219	M29054_AN538_1	ROCHEBIO	RPAMM	f	SNP	T			C	C	C	T	C	C		C	T	C	C					C		T	T
ss45437033	mCV25136008	ABI	CRAMUS_MOUSE	f	SNP			T		C							T		C
ss49552831	NES12889822	PERLEGEN	MM_PANEL2	f	SNP		T			C	C		C		T	C		C	C	C	C		C		C			T	C		T
ss134559914	ENSMUSSNP2434222	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		C									C
ss320643283	CHEV_3_7614643	CHEVERUD	SCREENING_POP	f	SNP																	C								C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs8246989					SNP	T	T	T	C	C	C	T	C	C	T	C	T	C	C	C	C	C	C	C	C	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49552831	NES12889822	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7679703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12955	CpG island 12955	1201 bp distal
Gm16685	predicted gene, 16685	within coordinates
Il7	interleukin 7	883 bp upstream
Rr77757	regulatory region 77757	702 bp distal
Tssr28303	transcription start site region 28303	1938 bp downstream
Tssr28304	transcription start site region 28304	754 bp downstream
Tssr28305	transcription start site region 28305	1350 bp upstream
Tssr32541	transcription start site region 32541	1051 bp upstream
Tssr32542	transcription start site region 32542	987 bp upstream
Tssr32543	transcription start site region 32543	939 bp upstream
Tssr32544	transcription start site region 32544	911 bp upstream
Tssr32545	transcription start site region 32545	878 bp upstream
Tssr32546	transcription start site region 32546	858 bp upstream