rs8247359 SNP Detail

Summary

• ID
  rs8247359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30213799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATCTGTA ACGGGACCTG
  GTGCCCTCTT CTAGCCTGCA GATGATTCAT CAGAGAATTC ATATATTAAA TAAATTAAAA
  AAAAAAAAAC CACCACCAAA CAACCTAAAA AAATCCCATA GAGAAATGGT TCAGATTAAG
  GAGTGAGGAG CTACGGATAA AGGGAAGTAC AGGGCCTTTA GACTTGCTCT GTGCTCCAGA
  R
  GCAACAAGGA ATCATGGGAG TTACAGGCAG AGGGGACATG GCAACAGGTT CTCTATCATG
  TGGACGGTGA GCCAAATTAA AGGCAGCCAT ACCAGCATAG CTTGTTTCAG TTTCAAACAG
  TGGCAAATAC TATGAACAAG TTAGGGGAAA CTTCTTGATG CATATTGTTA AGTAACAAGG
  CGAGACAACC ATCTAAAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	MSM/Ms	NZB/BlNJ	NZW/Lac
ss12742602	Prodh2_1_JC4011_5	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	G	G	G	G	G	A	G	G		A	G
ss148681140	ENSMUSSNP3709758	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G								G		A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	MSM/Ms	NZB/BlNJ	NZW/Lac
rs8247359					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30213799 () rs orientation: forward

Symbol	Name	Function Class
Arhgap33os	Rho GTPase activating protein 33, opposite strand	748 bp upstream
Prodh2	proline dehydrogenase (oxidase) 2	972 bp downstream
Tssr2186	transcription start site region 2186	855 bp upstream
Tssr65778	transcription start site region 65778	771 bp upstream