rs8247454 SNP Detail

Summary

• ID
  rs8247454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30214015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGTTACA GGCAGAGGGG
  ACATGGCAAC AGGTTCTCTA TCATGTGGAC GGTGAGCCAA ATTAAAGGCA GCCATACCAG
  CATAGCTTGT TTCAGTTTCA AACAGTGGCA AATACTATGA ACAAGTTAGG GGAAACTTCT
  TGATGCATAT TGTTAAGTAA CAAGGCGAGA CAACCATCTA AAACTGAATG GAGCCAGCCT
  Y
  GACAGTCCAG GTGATGTCTA AAGGGAGACG TTCTGAAGGG CCTTCAGGTA TGGGGCTCAG
  GGAAGAGCCT GGAAGTAGTC ATGGTGAACA CGGGACGACA GTTAGAGATG CGGAACCGCG
  GTTAAGAGGG TCCAGGATGG CATGGCTGGG AGTTGGGAGA GATGGCTGAA CGGTTAGGAG
  CACGGGCTGC CCACCCACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	PWD/PhJ	WSB/EiJ
ss12742706	Prodh2_1_JC4036_1	ROCHEBIO	RPAMM	f	SNP	C		C	C				C	T					C			T	C
ss60990912	NES16137437	PERLEGEN	MM_PANEL2	f	SNP		C	C		C	C	C		T		C	C	T			C			T	C
ss148681165	ENSMUSSNP2258606	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								C					T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	PWD/PhJ	WSB/EiJ
rs8247454					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990912	NES16137437	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30214015 () rs orientation: forward

Symbol	Name	Function Class
Arhgap33os	Rho GTPase activating protein 33, opposite strand	532 bp upstream
Prodh2	proline dehydrogenase (oxidase) 2	1188 bp downstream
Tssr2186	transcription start site region 2186	639 bp upstream
Tssr65778	transcription start site region 65778	555 bp upstream