rs8247459 SNP Detail

Summary

• ID
  rs8247459
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30214091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCATAGC TTGTTTCAGT
  TTCAAACAGT GGCAAATACT ATGAACAAGT TAGGGGAAAC TTCTTGATGC ATATTGTTAA
  GTAACAAGGC GAGACAACCA TCTAAAACTG AATGGAGCCA GCCTCGACAG TCCAGGTGAT
  GTCTAAAGGG AGACGTTCTG AAGGGCCTTC AGGTATGGGG CTCAGGGAAG AGCCTGGAAG
  W
  AGTCATGGTG AACACGGGAC GACAGTTAGA GATGCGGAAC CGCGGTTAAG AGGGTCCAGG
  ATGGCATGGC TGGGAGTTGG GAGAGATGGC TGAACGGTTA GGAGCACGGG CTGCCCACCC
  ACCCCAGTGT CTTGATTCTT AGCACCCACA GGGTAGATCA CACGCCCCTT TAACTCCAGT
  TCCTCTCTTT TGTCTATCGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12742711	Prodh2_1_JC4036_6	ROCHEBIO	RPAMM	f	SNP	T			T	T			T	T	T					T			A	T
ss60990910	NES16137439	PERLEGEN	MM_PANEL2	f	SNP		T	T	T		T	T	T		T	T	T	T	A			T			T	A	T
ss148681186	ENSMUSSNP6486599	ENSEMBL	ENSEMBL_Sanger	f	SNP			T								T					A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8247459					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	A	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990910	NES16137439	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30214091 () rs orientation: forward

Symbol	Name	Function Class
Arhgap33os	Rho GTPase activating protein 33, opposite strand	456 bp upstream
Prodh2	proline dehydrogenase (oxidase) 2	1264 bp downstream
Tssr2186	transcription start site region 2186	563 bp upstream
Tssr65778	transcription start site region 65778	479 bp upstream