rs8247460 SNP Detail

Summary

• ID
  rs8247460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30214131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAACAAGT TAGGGGAAAC
  TTCTTGATGC ATATTGTTAA GTAACAAGGC GAGACAACCA TCTAAAACTG AATGGAGCCA
  GCCTCGACAG TCCAGGTGAT GTCTAAAGGG AGACGTTCTG AAGGGCCTTC AGGTATGGGG
  CTCAGGGAAG AGCCTGGAAG TAGTCATGGT GAACACGGGA CGACAGTTAG AGATGCGGAA
  Y
  CGCGGTTAAG AGGGTCCAGG ATGGCATGGC TGGGAGTTGG GAGAGATGGC TGAACGGTTA
  GGAGCACGGG CTGCCCACCC ACCCCAGTGT CTTGATTCTT AGCACCCACA GGGTAGATCA
  CACGCCCCTT TAACTCCAGT TCCTCTCTTT TGTCTATCGT GGACTTTAGG AGCCCGTGTG
  CTGCGCTTAC ATACATACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12742712	Prodh2_1_JC4036_7	ROCHEBIO	RPAMM	f	SNP	C			C	C			C	C	T					C		C	C
ss60990909	NES16137440	PERLEGEN	MM_PANEL2	f	SNP		C	C	C		C	C	C		T	C	C	C	C		C			C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8247460					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990909	NES16137440	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30214131 () rs orientation: forward

Symbol	Name	Function Class
Arhgap33os	Rho GTPase activating protein 33, opposite strand	416 bp upstream
Prodh2	proline dehydrogenase (oxidase) 2	1304 bp downstream
Tssr2186	transcription start site region 2186	523 bp upstream
Tssr65778	transcription start site region 65778	439 bp upstream