rs8247464 SNP Detail

Summary

• ID
  rs8247464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30214443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATACACATAA TTAATATAAA TAATAAATAA AAACTAAGAG
  ATTCTGGCTG GCCTGAAGTT CTGGAGCACA CAAGGAGGAA GGAGAGTCAA CTGAAACCCT
  Y
  GGGTCAACAT CTCTGAACCT TCGCTATGAG ATGGTGGGGT CGGGTTGGGG GAATGCTTCT
  TAGGGCAGGC TACTGCGCAA GTGCGAGGTA GCAGGAAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss12742716	Prodh2_1_JC4037_1	ROCHEBIO	RPAMM	f	SNP		C	T		C			T		C
ss60990908	NES16137420	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C		C	T		T	C	T	T		T	C		T
ss148681224	ENSMUSSNP4146935	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								C
ss322134958	CHEV_7_31300037	CHEVERUD	SCREENING_POP	f	SNP													C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs8247464					SNP	C	C	T	C	C	C	T	T	T	C	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990908	NES16137420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30214443 () rs orientation: forward

Symbol	Name	Function Class
Arhgap33os	Rho GTPase activating protein 33, opposite strand	104 bp upstream
Prodh2	proline dehydrogenase (oxidase) 2	1616 bp downstream
Tssr2186	transcription start site region 2186	211 bp upstream
Tssr65778	transcription start site region 65778	127 bp upstream