rs8247564 SNP Detail

Summary

• ID
  rs8247564
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10611469 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                            TGTgtg ttgctggttt tgaaggcatg agggagtcat
  agagagcagc tgaggcttgg cactgtgaga gagccaaggc cattgatgaa ggtgcagcct
  cagttgcaga tgatggtcnn nnacngaagg ggcatgcttg gcaaggtgag gcctggcacc
  atgaagggat cctatgagag gctattggtg aagcctagtt gcagtggaaa accccagcat
  S
  ttggagatgc catcnccatg gatgatcacc aagaacagca gcagcagtgg agtggtgacc
  caagcccttt tgaggagccn agaagattat gcatggatcc cagacactag aacaagtaaa
  gttgaagttg ccttggagat gnnnnnttag agatgtcaga gttctgaggt acctgctgag
  gaaccagccc aagagaacng agtttgttgc TGNTGAATGC CAGCTCTGCC AACAGTANTC
  AACAAGGATG AAAGGTGTTG GG                                         
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	SPRET/EiJ
ss12742824	Z47352_AN1539_6	ROCHEBIO	RPAMM	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	SPRET/EiJ
rs8247564					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10611469 () rs orientation: reverse

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	1500 bp upstream
Tssr137055	transcription start site region 137055	1787 bp downstream
Tssr137056	transcription start site region 137056	1773 bp downstream
Tssr139954	transcription start site region 139954	1965 bp upstream
Tssr139955	transcription start site region 139955	1866 bp upstream
Tssr139956	transcription start site region 139956	1498 bp upstream
Tssr139957	transcription start site region 139957	440 bp upstream