rs8247572 SNP Detail

Summary

• ID
  rs8247572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10611353 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGCTG AGGAACCAGC CCAAGAGAAC
  R
  GAGTTTGTTG CTGCTGAATG CCAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MRL/MpJ	SPRET/EiJ
ss12742832	Z47352_AN1539_14	ROCHEBIO	RPAMM	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MRL/MpJ	SPRET/EiJ
rs8247572					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10611353 () rs orientation: reverse

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	1384 bp upstream
Tssr137054	transcription start site region 137054	1898 bp downstream
Tssr137055	transcription start site region 137055	1671 bp downstream
Tssr137056	transcription start site region 137056	1657 bp downstream
Tssr139953	transcription start site region 139953	1902 bp upstream
Tssr139954	transcription start site region 139954	1849 bp upstream
Tssr139955	transcription start site region 139955	1750 bp upstream
Tssr139956	transcription start site region 139956	1382 bp upstream
Tssr139957	transcription start site region 139957	324 bp upstream