rs8247573 SNP Detail

Summary

• ID
  rs8247573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10611339 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCCAA GAGAACGGAG TTTGTTGCTG
  Y
  TGAATGCCAG CTCTGCCAAC AGTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	SPRET/EiJ
ss12742833	Z47352_AN1539_15	ROCHEBIO	RPAMM	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	SPRET/EiJ
rs8247573					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10611339 () rs orientation: reverse

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	1370 bp upstream
Tssr137054	transcription start site region 137054	1884 bp downstream
Tssr137055	transcription start site region 137055	1657 bp downstream
Tssr137056	transcription start site region 137056	1643 bp downstream
Tssr139952	transcription start site region 139952	1992 bp upstream
Tssr139953	transcription start site region 139953	1888 bp upstream
Tssr139954	transcription start site region 139954	1835 bp upstream
Tssr139955	transcription start site region 139955	1736 bp upstream
Tssr139956	transcription start site region 139956	1368 bp upstream
Tssr139957	transcription start site region 139957	310 bp upstream