rs8247579 SNP Detail

Summary

• ID
  rs8247579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10610289 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGTAG AGTGCTTCCT CGAATGCCCA
  R
  CCAAGGCCAT GCATGGGCTG CATCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12742839	Z47352_AN1541_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8247579					SNP	A	A	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10610289 () rs orientation: reverse

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	320 bp upstream
Prm3	protamine 3	1511 bp upstream
Tssr137053	transcription start site region 137053	977 bp downstream
Tssr137054	transcription start site region 137054	834 bp downstream
Tssr137055	transcription start site region 137055	607 bp downstream
Tssr137056	transcription start site region 137056	593 bp downstream
Tssr139950	transcription start site region 139950	1506 bp upstream
Tssr139951	transcription start site region 139951	1475 bp upstream
Tssr139952	transcription start site region 139952	942 bp upstream
Tssr139953	transcription start site region 139953	838 bp upstream
Tssr139954	transcription start site region 139954	785 bp upstream
Tssr139955	transcription start site region 139955	686 bp upstream
Tssr139956	transcription start site region 139956	318 bp upstream
Tssr139957	transcription start site region 139957	708 bp downstream