rs8247581 SNP Detail

Summary

• ID
  rs8247581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10610229 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CATGT CCAGGGCATG GAAGCACACA
  Y
  ATGTGATTCC AACCCCTGGG AGGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12742841	Z47352_AN1541_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8247581					SNP	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10610229 () rs orientation: reverse

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	260 bp upstream
Prm3	protamine 3	1451 bp upstream
Rr511598	regulatory region 511598	1597 bp distal
Rr511599	regulatory region 511599	1458 bp distal
Tssr137053	transcription start site region 137053	917 bp downstream
Tssr137054	transcription start site region 137054	774 bp downstream
Tssr137055	transcription start site region 137055	547 bp downstream
Tssr137056	transcription start site region 137056	533 bp downstream
Tssr139950	transcription start site region 139950	1446 bp upstream
Tssr139951	transcription start site region 139951	1415 bp upstream
Tssr139952	transcription start site region 139952	882 bp upstream
Tssr139953	transcription start site region 139953	778 bp upstream
Tssr139954	transcription start site region 139954	725 bp upstream
Tssr139955	transcription start site region 139955	626 bp upstream
Tssr139956	transcription start site region 139956	258 bp upstream
Tssr139957	transcription start site region 139957	768 bp downstream