rs8247582 SNP Detail

Summary

• ID
  rs8247582
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10610188 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTGGG AGGTAAAGGG ACCAGGGTTA
  R
  AAGTTCAAGG TCATTCTTCA TTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12742842	Z47352_AN1541_4	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8247582					SNP	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10610188 () rs orientation: reverse

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	219 bp upstream
Prm3	protamine 3	1410 bp upstream
Rr511598	regulatory region 511598	1556 bp distal
Rr511599	regulatory region 511599	1417 bp distal
Tssr137053	transcription start site region 137053	876 bp downstream
Tssr137054	transcription start site region 137054	733 bp downstream
Tssr137055	transcription start site region 137055	506 bp downstream
Tssr137056	transcription start site region 137056	492 bp downstream
Tssr139950	transcription start site region 139950	1405 bp upstream
Tssr139951	transcription start site region 139951	1374 bp upstream
Tssr139952	transcription start site region 139952	841 bp upstream
Tssr139953	transcription start site region 139953	737 bp upstream
Tssr139954	transcription start site region 139954	684 bp upstream
Tssr139955	transcription start site region 139955	585 bp upstream
Tssr139956	transcription start site region 139956	217 bp upstream
Tssr139957	transcription start site region 139957	809 bp downstream