rs8247584 SNP Detail

Summary

• ID
  rs8247584
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10610092 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CCAACCAAGG CCATGCATGG
  GCTGCATCTC CAACACTGCA TGTCCAGGGC ATGGAAGCAC ACATATGTGA TTCCAACCCC
  TGGGAGGTAA AGGGACCAGG GTTAGAAGTT CAAGGTCATT CTTCATTGTG TGAGGCCATC
  TCACATTCAA TAAGTCAGCA TGCTTCAAAG CAAGATGAGT AACTTGGCCC CTAAGCCAGT
  S
  CTGCAAACCC TGTGCCGCCC TCACAGAGGG GACTGGGCAG GGTGGGAACA ATCAATCAGG
  GGTGGGCCGA CAGGTCACAG TGGGGTTTAC CTTTATATAT GAGCCCTCTG AGAGCCCCAA
  ACACCAGACC ATCATCACCA CCAAGAGCAG GTGGGCAGGC TTTCGTCCCT CCTCCTCCAA
  TCCAGGTCAG CTGCAGCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12742844	Z47352_AN1541_6	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8247584					SNP	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10610092 () rs orientation: reverse

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	123 bp upstream
Prm3	protamine 3	1314 bp upstream
Tssr137053	transcription start site region 137053	780 bp downstream
Tssr137054	transcription start site region 137054	637 bp downstream
Tssr137055	transcription start site region 137055	410 bp downstream
Tssr137056	transcription start site region 137056	396 bp downstream
Tssr139950	transcription start site region 139950	1309 bp upstream
Tssr139951	transcription start site region 139951	1278 bp upstream
Tssr139952	transcription start site region 139952	745 bp upstream
Tssr139953	transcription start site region 139953	641 bp upstream
Tssr139954	transcription start site region 139954	588 bp upstream
Tssr139955	transcription start site region 139955	489 bp upstream
Tssr139956	transcription start site region 139956	121 bp upstream
Tssr139957	transcription start site region 139957	905 bp downstream