rs8247587 SNP Detail

Summary

• ID
  rs8247587
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10609809 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTGAG GGTCCGCACC AGGGGCCTGG
  R
  CAAGACCATG AACGCGAGGA GCAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12742847	Z47352_AN1542_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8247587					SNP	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10609809 () rs orientation: reverse

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	within coordinates
Prm3	protamine 3	1031 bp upstream
Rr511598	regulatory region 511598	1177 bp distal
Rr511599	regulatory region 511599	1038 bp distal
Tssr137053	transcription start site region 137053	497 bp downstream
Tssr137054	transcription start site region 137054	354 bp downstream
Tssr137055	transcription start site region 137055	127 bp downstream
Tssr137056	transcription start site region 137056	113 bp downstream
Tssr139950	transcription start site region 139950	1026 bp upstream
Tssr139951	transcription start site region 139951	995 bp upstream
Tssr139952	transcription start site region 139952	462 bp upstream
Tssr139953	transcription start site region 139953	358 bp upstream
Tssr139954	transcription start site region 139954	305 bp upstream
Tssr139955	transcription start site region 139955	206 bp upstream
Tssr139956	transcription start site region 139956	150 bp downstream
Tssr139957	transcription start site region 139957	1188 bp downstream