rs8247588 SNP Detail

Summary

• ID
  rs8247588
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10609584 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCAGA GGTAAGCACC CCACAGCCGA
  S
  CCCCTGGCCA CCTGTGCTGC TGCTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12742848	Z47352_AN1543_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	G	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8247588					SNP	C	C	C	C	G	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10609584 () rs orientation: reverse

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	within coordinates
Prm3	protamine 3	806 bp upstream
Rr511598	regulatory region 511598	952 bp distal
Rr511599	regulatory region 511599	813 bp distal
Tssr137053	transcription start site region 137053	272 bp downstream
Tssr137054	transcription start site region 137054	129 bp downstream
Tssr137055	transcription start site region 137055	81 bp upstream
Tssr137056	transcription start site region 137056	104 bp upstream
Tssr139950	transcription start site region 139950	801 bp upstream
Tssr139951	transcription start site region 139951	770 bp upstream
Tssr139952	transcription start site region 139952	237 bp upstream
Tssr139953	transcription start site region 139953	133 bp upstream
Tssr139954	transcription start site region 139954	80 bp upstream
Tssr139955	transcription start site region 139955	11 bp downstream
Tssr139956	transcription start site region 139956	375 bp downstream
Tssr139957	transcription start site region 139957	1413 bp downstream