rs8247590 SNP Detail

Summary

• ID
  rs8247590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10609535 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGCCC ATCTAAACCC TGCTGCCTTC
  Y
  AGGCAGCCTA GCAAACCTCG ACTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12742850	Z47352_AN1543_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8247590					SNP	C	C	C	C	T	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10609535 () rs orientation: reverse

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	within coordinates
Prm3	protamine 3	757 bp upstream
Tssr137053	transcription start site region 137053	223 bp downstream
Tssr137054	transcription start site region 137054	80 bp downstream
Tssr137055	transcription start site region 137055	130 bp upstream
Tssr137056	transcription start site region 137056	153 bp upstream
Tssr139950	transcription start site region 139950	752 bp upstream
Tssr139951	transcription start site region 139951	721 bp upstream
Tssr139952	transcription start site region 139952	188 bp upstream
Tssr139953	transcription start site region 139953	84 bp upstream
Tssr139954	transcription start site region 139954	31 bp upstream
Tssr139955	transcription start site region 139955	60 bp downstream
Tssr139956	transcription start site region 139956	424 bp downstream
Tssr139957	transcription start site region 139957	1462 bp downstream