rs8247592 SNP Detail

Summary

• ID
  rs8247592
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10608988 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GAGCT GGACTGAGAC CATCTTCCCA
  R
  CACATGAGTT AACATGTTCA GCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	SPRET/EiJ
ss12742852	Z47352_AN1545_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	SPRET/EiJ
rs8247592					SNP	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10608988 () rs orientation: reverse

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	253 bp downstream
Prm3	protamine 3	210 bp upstream
Tssr137053	transcription start site region 137053	309 bp upstream
Tssr137054	transcription start site region 137054	459 bp upstream
Tssr137055	transcription start site region 137055	677 bp upstream
Tssr137056	transcription start site region 137056	700 bp upstream
Tssr139950	transcription start site region 139950	205 bp upstream
Tssr139951	transcription start site region 139951	174 bp upstream
Tssr139952	transcription start site region 139952	355 bp downstream
Tssr139953	transcription start site region 139953	460 bp downstream
Tssr139954	transcription start site region 139954	509 bp downstream
Tssr139955	transcription start site region 139955	607 bp downstream
Tssr139956	transcription start site region 139956	971 bp downstream