rs8247606 SNP Detail

Summary

• ID
  rs8247606
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10608846 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AATGGGGTGG GGAGGGGGTG
  GGGTGGCATG GTGGAGCTGG ACTGAGACCA TCTTCCCAGC ACATGAGTTA ACATGTTCAG
  CTCCTCTAGT TTGTGCCCTC TCCAGCGTCT ACTCTACCCC AATCATTCCA GCTCAGCCAG
  GGTTCCTGGA AAATGTAAGC ATAGCTCCAA ATTCTGGGGT GGGGGAGGGT GGTGCCTTGG
  W
  GCCTTTGTGA GGTCAGTGCC ACACCCACCA GTCTCACACT CTCTCGCTAC CCAGGCTGCC
  TCCCTCCTAG TCCAGAGAGA CAGGAGTGGG CGATGGGTTC CCGCTGTGCC AAGCTCAGCA
  CTGGCCATGG CCCAGCCCAG AACACTGGTC ACAGCCGTGG CCACGAGTCC TCCATGAAGA
  AGCTCGTGGC CTGTGTGAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12742866	Z47352_AN1545_15	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8247606					SNP	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10608846 () rs orientation: reverse

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	395 bp downstream
Prm3	protamine 3	68 bp upstream
Rr511597	regulatory region 511597	1832 bp distal
Rr511598	regulatory region 511598	214 bp distal
Rr511599	regulatory region 511599	75 bp distal
Tssr137053	transcription start site region 137053	451 bp upstream
Tssr137054	transcription start site region 137054	601 bp upstream
Tssr137055	transcription start site region 137055	819 bp upstream
Tssr137056	transcription start site region 137056	842 bp upstream
Tssr139950	transcription start site region 139950	63 bp upstream
Tssr139951	transcription start site region 139951	32 bp upstream
Tssr139952	transcription start site region 139952	497 bp downstream
Tssr139953	transcription start site region 139953	602 bp downstream
Tssr139954	transcription start site region 139954	651 bp downstream
Tssr139955	transcription start site region 139955	749 bp downstream
Tssr139956	transcription start site region 139956	1113 bp downstream