rs8247609 SNP Detail

Summary

• ID
  rs8247609
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:10608598 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAGAG GGCGAGGAAG AGGAGGAGGA
  M
  GAGGAAGAGG AGGAGGAGGA AGAAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	DBA/2J	SPRET/EiJ
ss12742869	Z47352_AN1546_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	DBA/2J	SPRET/EiJ
rs8247609					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10608598 () rs orientation: reverse

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	643 bp downstream
Prm3	protamine 3	Coding-Synonymous
Rr511597	regulatory region 511597	1584 bp distal
Rr511598	regulatory region 511598	13 bp proximal
Rr511599	regulatory region 511599	152 bp proximal
Tssr137053	transcription start site region 137053	699 bp upstream
Tssr137054	transcription start site region 137054	849 bp upstream
Tssr137055	transcription start site region 137055	1067 bp upstream
Tssr137056	transcription start site region 137056	1090 bp upstream
Tssr139950	transcription start site region 139950	168 bp downstream
Tssr139951	transcription start site region 139951	207 bp downstream
Tssr139952	transcription start site region 139952	745 bp downstream
Tssr139953	transcription start site region 139953	850 bp downstream
Tssr139954	transcription start site region 139954	899 bp downstream
Tssr139955	transcription start site region 139955	997 bp downstream
Tssr139956	transcription start site region 139956	1361 bp downstream