rs8247613 SNP Detail

Summary

• ID
  rs8247613
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10608180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTT TCCTCTGGGC TTCCCTGCAT
  R
  TAGCCACATC CTCCATAGAG GATGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
ss12742873	Z47352_AN1547_1	ROCHEBIO	RPAMM	f	SNP			A	G	A	A	G
ss147847347	ENSMUSSNP4998435	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A					G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
rs8247613					SNP	A	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10608180 () rs orientation: forward

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	1061 bp downstream
Prm3	protamine 3	192 bp downstream
Rr511596	regulatory region 511596	1999 bp distal
Rr511597	regulatory region 511597	1166 bp distal
Rr511598	regulatory region 511598	431 bp proximal
Rr511599	regulatory region 511599	570 bp proximal
Tnp2	transition protein 2	1661 bp upstream
Tssr137052	transcription start site region 137052	1966 bp downstream
Tssr137053	transcription start site region 137053	1117 bp upstream
Tssr137054	transcription start site region 137054	1267 bp upstream
Tssr137055	transcription start site region 137055	1485 bp upstream
Tssr137056	transcription start site region 137056	1508 bp upstream
Tssr139949	transcription start site region 139949	1648 bp upstream
Tssr139950	transcription start site region 139950	586 bp downstream
Tssr139951	transcription start site region 139951	625 bp downstream
Tssr139952	transcription start site region 139952	1163 bp downstream
Tssr139953	transcription start site region 139953	1268 bp downstream
Tssr139954	transcription start site region 139954	1317 bp downstream
Tssr139955	transcription start site region 139955	1415 bp downstream
Tssr139956	transcription start site region 139956	1779 bp downstream