rs8247661 SNP Detail

Summary

• ID
  rs8247661
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10610636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT AGTAGTGCTA GCTTAAATAA
  K
  ATCTAAACTA GTTGCAAAAA GTGCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac
ss12742930	Z47352_AN1560_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	T	G	G	T	G	G
ss147847370	ENSMUSSNP3104297	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac
rs8247661					SNP	G	G	G	G	G	G	T	G	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10610636 () rs orientation: forward

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	667 bp upstream
Prm3	protamine 3	1858 bp upstream
Rr511599	regulatory region 511599	1865 bp distal
Tssr137053	transcription start site region 137053	1324 bp downstream
Tssr137054	transcription start site region 137054	1181 bp downstream
Tssr137055	transcription start site region 137055	954 bp downstream
Tssr137056	transcription start site region 137056	940 bp downstream
Tssr139950	transcription start site region 139950	1853 bp upstream
Tssr139951	transcription start site region 139951	1822 bp upstream
Tssr139952	transcription start site region 139952	1289 bp upstream
Tssr139953	transcription start site region 139953	1185 bp upstream
Tssr139954	transcription start site region 139954	1132 bp upstream
Tssr139955	transcription start site region 139955	1033 bp upstream
Tssr139956	transcription start site region 139956	665 bp upstream
Tssr139957	transcription start site region 139957	361 bp downstream