rs8247698 SNP Detail

Summary

• ID
  rs8247698
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10611805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAAGCCT CAGCTGCTCT
  CTATGACTCC CTCATGCCTT CAAAACCAGC AACACACACA TATCTTACAC ATTACCAAGT
  CCAGCTGTAG CACAAGGTAT TAGATTTTTT TGTGCTGGTC TCTTAATCAC TGTTAACCAG
  CATTATGCTT GAACTCAAGC TTTTCTTCAC CTTGAACTTG CTCTGTCCCA AGCTGACTTT
  R
  AATTTAGAGA TCTGCTTGCC TTTGTCTTCT GGGATTAAAA GTGTGTACCA CCATGCGTGG
  GCCTAAGCTC TTCATGGCCA CTATTCCTCA AGATCTAGAT CAAAAAGGTC TGTGCCCTCC
  ATCCTACCTT TCTGGATTGT AAAGTTTTCC AGGTTAAAAA TCCAAATGAA AACATCTAAC
  CTTGTTCAAC TGTAAACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12742967	Z47352_AN1569_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8247698					SNP	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10611805 () rs orientation: forward

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	1836 bp upstream
Tssr139956	transcription start site region 139956	1834 bp upstream
Tssr139957	transcription start site region 139957	776 bp upstream