rs8247699 SNP Detail

Summary

• ID
  rs8247699
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10611885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCTGTAG CACAAGGTAT
  TAGATTTTTT TGTGCTGGTC TCTTAATCAC TGTTAACCAG CATTATGCTT GAACTCAAGC
  TTTTCTTCAC CTTGAACTTG CTCTGTCCCA AGCTGACTTT GAATTTAGAG ATCTGCTTGC
  CTTTGTCTTC TGGGATTAAA AGTGTGTACC ACCATGCGTG GGCCTAAGCT CTTCATGGCC
  W
  CTATTCCTCA AGATCTAGAT CAAAAAGGTC TGTGCCCTCC ATCCTACCTT TCTGGATTGT
  AAAGTTTTCC AGGTTAAAAA TCCAAATGAA AACATCTAAC CTTGTTCAAC TGTAAACACA
  AACAACCATA GCTGGGTGGG ATCTTGCCTG AGGAGTCTCT AAACCCATCC CCACAGTGAC
  ACACTTCCTC CAACAAGGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12742968	Z47352_AN1569_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8247699					SNP	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10611885 () rs orientation: forward

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	1916 bp upstream
Tssr139956	transcription start site region 139956	1914 bp upstream
Tssr139957	transcription start site region 139957	856 bp upstream
Tssr139958	transcription start site region 139958	1921 bp downstream