rs8247999 SNP Detail

Summary

• ID
  rs8247999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:24236633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTTTGG ATCCACAGCT
  GGAGGCTGGG ACTCTAACTG TGATTCTATA CATCTATCCC AAGGCAAGTC TGTCCCACAG
  ATCCAGTAAC TGCTTCGTGA GATTTACCAT CATCACATCC TCTTAGCAGC CTCAAGAGAG
  GTCCCTGGAG TCCTGTTAGC AAGACTATTG AGTCCCTTGA GTTTGAAGCT CACCAGAGAT
  R
  TAGACACCAG TCACAAAGGC ACAAATACTC TTTCACGTGC AGAGTACTTG GTTTGTCCTC
  CACCCATCCC TGAGCTCCTA GGCTGCTCCA AGCTACTCAA AAAGTCCTGT CAGCTCTGCT
  GACCAGGTAA AGAGATAAGG GACAGATCCA AGGTCATATC ATCAGGCCTC TTACCACACC
  TCACAGGTGC CTGCCTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12743293	L32838_JC4372_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8247999					SNP	A	A	A	A	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24236633 () rs orientation: forward

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	within coordinates
Rr41952	regulatory region 41952	968 bp proximal
Rr56387	regulatory region 56387	1033 bp distal
Tssr16578	transcription start site region 16578	1349 bp downstream
Tssr16579	transcription start site region 16579	1326 bp downstream
Tssr16580	transcription start site region 16580	1274 bp downstream
Tssr16581	transcription start site region 16581	1199 bp downstream
Tssr16582	transcription start site region 16582	833 bp upstream
Tssr16583	transcription start site region 16583	1082 bp upstream
Tssr16584	transcription start site region 16584	1949 bp upstream