rs8248000 SNP Detail

Summary

• ID
  rs8248000
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:24236638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGATCCA CAGCTGGAGG
  CTGGGACTCT AACTGTGATT CTATACATCT ATCCCAAGGC AAGTCTGTCC CACAGATCCA
  GTAACTGCTT CGTGAGATTT ACCATCATCA CATCCTCTTA GCAGCCTCAA GAGAGGTCCC
  TGGAGTCCTG TTAGCAAGAC TATTGAGTCC CTTGAGTTTG AAGCTCACCA GAGATATAGA
  S
  ACCAGTCACA AAGGCACAAA TACTCTTTCA CGTGCAGAGT ACTTGGTTTG TCCTCCACCC
  ATCCCTGAGC TCCTAGGCTG CTCCAAGCTA CTCAAAAAGT CCTGTCAGCT CTGCTGACCA
  GGTAAAGAGA TAAGGGACAG ATCCAAGGTC ATATCATCAG GCCTCTTACC ACACCTCACA
  GGTGCCTGCC TCTCTGGAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cJ	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12743294	L32838_JC4372_3	ROCHEBIO	RPAMM	f	SNP	C	C	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cJ	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8248000					SNP	C	C	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24236638 () rs orientation: forward

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	within coordinates
Rr41952	regulatory region 41952	963 bp proximal
Rr56387	regulatory region 56387	1038 bp distal
Tssr16578	transcription start site region 16578	1354 bp downstream
Tssr16579	transcription start site region 16579	1331 bp downstream
Tssr16580	transcription start site region 16580	1279 bp downstream
Tssr16581	transcription start site region 16581	1204 bp downstream
Tssr16582	transcription start site region 16582	828 bp upstream
Tssr16583	transcription start site region 16583	1077 bp upstream
Tssr16584	transcription start site region 16584	1944 bp upstream