rs8248001 SNP Detail

Summary

• ID
  rs8248001
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:24236678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATACATCT ATCCCAAGGC
  AAGTCTGTCC CACAGATCCA GTAACTGCTT CGTGAGATTT ACCATCATCA CATCCTCTTA
  GCAGCCTCAA GAGAGGTCCC TGGAGTCCTG TTAGCAAGAC TATTGAGTCC CTTGAGTTTG
  AAGCTCACCA GAGATATAGA CACCAGTCAC AAAGGCACAA ATACTCTTTC ACGTGCAGAG
  K
  ACTTGGTTTG TCCTCCACCC ATCCCTGAGC TCCTAGGCTG CTCCAAGCTA CTCAAAAAGT
  CCTGTCAGCT CTGCTGACCA GGTAAAGAGA TAAGGGACAG ATCCAAGGTC ATATCATCAG
  GCCTCTTACC ACACCTCACA GGTGCCTGCC TCTCTGGAAG CCAGAGGGCC TTTCACCAAG
  AAGTCAGAGA GTAACAAACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cJ	CAST/EiJ	NZW/Lac	SPRET/EiJ
ss12743295	L32838_JC4372_4	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cJ	CAST/EiJ	NZW/Lac	SPRET/EiJ
rs8248001					SNP	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24236678 () rs orientation: forward

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	within coordinates
Rr41952	regulatory region 41952	923 bp proximal
Rr56387	regulatory region 56387	1078 bp distal
Tssr16578	transcription start site region 16578	1394 bp downstream
Tssr16579	transcription start site region 16579	1371 bp downstream
Tssr16580	transcription start site region 16580	1319 bp downstream
Tssr16581	transcription start site region 16581	1244 bp downstream
Tssr16582	transcription start site region 16582	788 bp upstream
Tssr16583	transcription start site region 16583	1037 bp upstream
Tssr16584	transcription start site region 16584	1904 bp upstream