rs8248005 SNP Detail

Summary

• ID
  rs8248005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:24236882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTTGTCC TCCACCCATC
  CCTGAGCTCC TAGGCTGCTC CAAGCTACTC AAAAAGTCCT GTCAGCTCTG CTGACCAGGT
  AAAGAGATAA GGGACAGATC CAAGGTCATA TCATCAGGCC TCTTACCACA CCTCACAGGT
  GCCTGCCTCT CTGGAAGCCA GAGGGCCTTT CACCAAGAAG TCAGAGAGTA ACAAACAGGC
  Y
  CTGGCTGAGC TAGACAGGAA GCTGACTTAT TTCCAAGGAC AGCTGTCCCT GTCAGGCCCA
  GAGCAGATGG TCCCACAAGA GGTTTTAGTT GTAGACTTGC AGGTCTAAGT AGAGTAGCTT
  GAGGTAGGAG TAGTGGAGCC AGACTAGCTT GGCTACAATA CATTCTAACC CTTGAACCTG
  TAACACTATG ATGTGGTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12743299	L32838_JC4373_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8248005					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24236882 () rs orientation: forward

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	within coordinates
Rr41952	regulatory region 41952	719 bp proximal
Rr56387	regulatory region 56387	1282 bp distal
Tssr16578	transcription start site region 16578	1598 bp downstream
Tssr16579	transcription start site region 16579	1575 bp downstream
Tssr16580	transcription start site region 16580	1523 bp downstream
Tssr16581	transcription start site region 16581	1448 bp downstream
Tssr16582	transcription start site region 16582	584 bp upstream
Tssr16583	transcription start site region 16583	833 bp upstream
Tssr16584	transcription start site region 16584	1700 bp upstream