rs8248006 SNP Detail

Summary

• ID
  rs8248006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:24236884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGTCCTC CACCCATCCC
  TGAGCTCCTA GGCTGCTCCA AGCTACTCAA AAAGTCCTGT CAGCTCTGCT GACCAGGTAA
  AGAGATAAGG GACAGATCCA AGGTCATATC ATCAGGCCTC TTACCACACC TCACAGGTGC
  CTGCCTCTCT GGAAGCCAGA GGGCCTTTCA CCAAGAAGTC AGAGAGTAAC AAACAGGCCC
  Y
  GGCTGAGCTA GACAGGAAGC TGACTTATTT CCAAGGACAG CTGTCCCTGT CAGGCCCAGA
  GCAGATGGTC CCACAAGAGG TTTTAGTTGT AGACTTGCAG GTCTAAGTAG AGTAGCTTGA
  GGTAGGAGTA GTGGAGCCAG ACTAGCTTGG CTACAATACA TTCTAACCCT TGAACCTGTA
  ACACTATGAT GTGGTGGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12743300	L32838_JC4373_4	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	T	T		T	T	C	T					T	T		T
ss37426411	NES08783638	PERLEGEN	MM_PANEL2	f	SNP		T		T	T	T		T	T		C	T	T	T	T	T			T		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8248006					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37426411	NES08783638	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24236884 () rs orientation: forward

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	within coordinates
Rr41952	regulatory region 41952	717 bp proximal
Rr56387	regulatory region 56387	1284 bp distal
Tssr16578	transcription start site region 16578	1600 bp downstream
Tssr16579	transcription start site region 16579	1577 bp downstream
Tssr16580	transcription start site region 16580	1525 bp downstream
Tssr16581	transcription start site region 16581	1450 bp downstream
Tssr16582	transcription start site region 16582	582 bp upstream
Tssr16583	transcription start site region 16583	831 bp upstream
Tssr16584	transcription start site region 16584	1698 bp upstream