rs8248007 SNP Detail

Summary

• ID
  rs8248007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:24236903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCTCCT AGGCTGCTCC
  AAGCTACTCA AAAAGTCCTG TCAGCTCTGC TGACCAGGTA AAGAGATAAG GGACAGATCC
  AAGGTCATAT CATCAGGCCT CTTACCACAC CTCACAGGTG CCTGCCTCTC TGGAAGCCAG
  AGGGCCTTTC ACCAAGAAGT CAGAGAGTAA CAAACAGGCC CTGGCTGAGC TAGACAGGAA
  R
  CTGACTTATT TCCAAGGACA GCTGTCCCTG TCAGGCCCAG AGCAGATGGT CCCACAAGAG
  GTTTTAGTTG TAGACTTGCA GGTCTAAGTA GAGTAGCTTG AGGTAGGAGT AGTGGAGCCA
  GACTAGCTTG GCTACAATAC ATTCTAACCC TTGAACCTGT AACACTATGA TGTGGTGGCC
  ACGAGCTACA AGTGGCCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12743301	L32838_JC4373_5	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8248007					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24236903 () rs orientation: forward

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	Intron
Rr552851	regulatory region 552851	1876 bp distal
Rr552852	regulatory region 552852	1571 bp distal
Rr552853	regulatory region 552853	773 bp proximal
Tssr16578	transcription start site region 16578	1619 bp downstream
Tssr16579	transcription start site region 16579	1596 bp downstream
Tssr16580	transcription start site region 16580	1544 bp downstream
Tssr16581	transcription start site region 16581	1469 bp downstream
Tssr16582	transcription start site region 16582	563 bp upstream
Tssr16583	transcription start site region 16583	812 bp upstream
Tssr16584	transcription start site region 16584	1679 bp upstream