rs8248008 SNP Detail

Summary

• ID
  rs8248008
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:24236938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGTCAGC TCTGCTGACC
  AGGTAAAGAG ATAAGGGACA GATCCAAGGT CATATCATCA GGCCTCTTAC CACACCTCAC
  AGGTGCCTGC CTCTCTGGAA GCCAGAGGGC CTTTCACCAA GAAGTCAGAG AGTAACAAAC
  AGGCCCTGGC TGAGCTAGAC AGGAAGCTGA CTTATTTCCA AGGACAGCTG TCCCTGTCAG
  R
  CCCAGAGCAG ATGGTCCCAC AAGAGGTTTT AGTTGTAGAC TTGCAGGTCT AAGTAGAGTA
  GCTTGAGGTA GGAGTAGTGG AGCCAGACTA GCTTGGCTAC AATACATTCT AACCCTTGAA
  CCTGTAACAC TATGATGTGG TGGCCACGAG CTACAAGTGG CCATCTAAAT TTACACATAA
  ACGCATGAAA GCAGAAGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12743302	L32838_JC4373_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8248008					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24236938 () rs orientation: forward

Symbol	Name	Function Class
Il1rn	interleukin 1 receptor antagonist	within coordinates
Rr41952	regulatory region 41952	663 bp proximal
Rr56387	regulatory region 56387	1338 bp distal
Tssr16578	transcription start site region 16578	1654 bp downstream
Tssr16579	transcription start site region 16579	1631 bp downstream
Tssr16580	transcription start site region 16580	1579 bp downstream
Tssr16581	transcription start site region 16581	1504 bp downstream
Tssr16582	transcription start site region 16582	528 bp upstream
Tssr16583	transcription start site region 16583	777 bp upstream
Tssr16584	transcription start site region 16584	1644 bp upstream